List of free and open-source software packages

This is a list of free and open-source software (FOSS) packages, computer software licensed under free software licenses and open-source licenses. Software that fits the Free Software Definition may be more appropriately called free software; the GNU project in particular objects to their works being referred to as open-source.[1] For more information about the philosophical background for open-source software, see free software movement and Open Source Initiative. However, nearly all software meeting the Free Software Definition also meets the Open Source Definition and vice versa. A small fraction of the software that meets either definition is listed here. Some of the open-source applications are also the basis of commercial products, shown in the List of commercial open-source applications and services.

Artificial intelligence

Agentic AI

  • OpenClaw — agentic AI to handle tasks on your computer
  • Auto-GPT — open-source autonomous goal-driven AI agent framework
  • AgentGPT — browser-based autonomous AI agent platform

General AI

  • OpenCog – project that aims to build an artificial general intelligence (AGI) framework. OpenCog Prime is a specific set of interacting components designed to give rise to human-equivalent artificial general intelligence.

Large language models

  • Apertus – Swiss National AI Initiative LLM[2]
  • BERTGoogle LLM
  • DeepSeek – R1 and V3 models[3]
  • Gemma 4 – Google LLM[4]
  • GLM-4.5 and later versions – Z.ai LLMs[5]
  • GPT-1, GPT-2, and GPT-OSS – OpenAI LLMs[6]
  • GPT-J – EleutherAI LLM
  • Grok-1 – xAI LLM
  • Kimi (some versions) – Moonshot AI LLMs
  • Mistral (some versions)[7]
  • OLMoAllen Institute for AI LLM
  • Phi – Microsoft LLMs
  • Qwen (some versions) – Alibaba Cloud LLMs[8]
  • Sarvam-M, Sarvam-105B and Sarvam-30B – Sarvam AI LLMs
  • Step-3.5-Flash – StepFun LLM
  • T5 – Google LLM
  • XLNet – Google LLM

Computer vision

Machine learning

Planning

  • TREX – reactive planning

Robotics

  • ArduPilot
  • CoppeliaSim
  • Gazebo
  • Mobile Robot Programming Toolkit
  • OpenRTM-aist
  • Paparazzi Project
  • Player Project
  • Python Robotics
  • Robot Operating System (ROS)
  • TurtleBot
  • UBtech Thinker[9]
  • Webots – robot simulator

Assistive technology

Speech (synthesis and recognition)

Other assistive technology

  • Dasher – unique text input software
  • Gnopernicus – AT suite for GNOME 2
  • Virtual Magnifying Glass – multi-platform screen magnification tool

CAD

Computer-aided engineering (CAE)

  • Advanced Simulation Library
  • ASCEND
  • DWSIM
  • Elmer FEM solver
  • Gmsh
  • LibreCAD
  • MapleSim
  • Modelica
  • OpenSim
  • OpenFOAM
  • Project Chrono
  • Salome
  • SimScale
  • SU2 code
  • xeokit

Computer-aided manufacturing (CAM)

  • Cura
  • Slic3r
  • MeshLab
  • OctoPrint
  • Marlin
  • Klipper
  • Repetier-Host
  • AstroPrint

Electronic design automation (EDA)

  • tscircuit
  • Electric
  • FreePCB
  • Fritzing – CAD software for the design of electronics hardware to build more permanent circuits from prototypes
  • gEDA
  • GNU Circuit Analysis Package (Gnucap)
  • Icarus Verilog
  • KiCad – suite for electronic design automation (EDA) for schematic capture, PCB layout, manufacturing file viewing, SPICE simulation, and engineering calculation
  • KTechLab
  • Magic
  • Ngspice
  • pcb-rnd
  • Oregano
  • Quite Universal Circuit Simulator (QUCS)
  • Verilator
  • XCircuit

Computer simulation

Cypherpunk software

Cryptography and Privacy Software

Hacking and Network Security Tools

  • Aircrack-ng – Wi-Fi security auditing tool
  • BackTrack – predecessor to Kali Linux
  • Burp Suite Community Edition – security assessment and penetration testing of web applications
  • Ghidra – software reverse engineering suite developed by the NSA
  • Hashcat – password recovery utility
  • High Orbit Ion Cannon - Ddos
  • hping3 — packet crafting and network penetration-testing utility
  • Hydra (software) – login cracker supporting numerous protocols
  • John the Ripperpassword cracking tool
  • Kali Linux – penetration testing Linux distribution
  • Metasploit Project – framework for developing and executing exploit code
  • Netcat – network utility for reading/writing data across networks
  • Nikto (vulnerability scanner) – web server vulnerability scanner
  • Nmap – network scanning, port scanner, and auditing tool
  • OpenSSH – implementation of the SSH protocol
  • Radare2 – reverse engineering framework
  • Snort (software) – network intrusion detection system
  • sqlmap – automated SQL injection and database takeover tool
  • Suricata (software) – network threat detection engine
  • Volatility (memory forensics) – memory forensics framework for incident response
  • Wireshark – network protocol analyzer
  • YARA – tool to identify and classify malware

Decentralized and Anonymous Communication Projects

Decentralized File Sharing and Storage

Cryptocurrencies and Anonymous Finance

Cybersecurity

Antivirus

Data loss prevention

  • MyDLP not updated since 2014

Data recovery

Forensics

  • The Coroner's Toolkit
  • The Sleuth Kit
Anti-forensics

Disk erasing

Encryption

Disk encryption

Firewall

Network and security monitoring

  • Snort – network intrusion detection system (IDS) and intrusion prevention system (IPS)
  • Suricata – network threat detection engine
  • OpenVAS – software framework of several services and tools offering vulnerability scanning and vulnerability management
  • Nmap – network scanner, port scanner, and security auditing tool
  • Nikto – web server vulnerability scanner
  • Volatility – memory forensics framework for incident response

Secure Shell (SSH)

Password management

Other cybersecurity programs

Data storage and management

Disk cleaning utilities

Backup software

Database management systems (including administration)

Data mining

  • Environment for DeveLoping KDD-Applications Supported by Index-Structures (ELKI) – data mining software framework written in Java with a focus on clustering and outlier detection methods
  • FrontlineSMS – information distribution and collecting via text messaging (SMS)
  • Konstanz Information Miner (KNIME)
  • OpenNN – neural network software library written in C++
  • Orange (software) – data visualization and data mining for novice and experts, through visual programming or Python scripting. Extensions for bioinformatics and text mining
  • RapidMiner – data mining software written in Java, fully integrating Weka, featuring 350+ operators for preprocessing, machine learning, visualization, etc. – the prior version is available as open-source
  • Scriptella ETL – ETL (Extract-Transform-Load) and script execution tool. Supports integration with J2EE and Spring. Provides connectors to CSV, LDAP, XML, JDBC/ODBC, and other data sources
  • Weka – data mining software written in Java featuring machine learning operators for classification, regression, and clustering
  • JasperSoft – data mining with programmable abstraction layer

Data Visualization Components

  • ParaView – plotting and visualization functions developed by Sandia National Laboratory; capable of massively parallel flow visualization utilizing multiple computer processors
  • VTK – toolkit for 3D computer graphics, image processing, and visualisation

Digital Asset Management software system

Disk partitioning software

Enterprise search engines

ETLs (Extract Transform Load)

File archivers

File systems

Desktop publishing

  • Collabora Online Draw and Writer – edition of LibreOffice accessible from a web browser
  • Scribus – designed for layout, typesetting, and preparation of files for professional-quality image-setting equipment. It can also create animated and interactive PDF presentations and forms
  • LyX – "What You See Is What You Mean" document creation system, LyX makes use of the LaTeX markup macro system for TeX, allowing the elegant creation of documents which match up with the layouts in it for various document classes

E-book management and editing

  • Calibre – cross-platform suite of ebook software
  • Collabora Online Writer – edition of LibreOffice accessible from a web browser
  • Sigil – editing software for e-books in the EPUB format

Education

E-learning, learning support

  • ATutor – web-based Learning Content Management System (LCMS)
  • Canvas LMS – web-based, open, extensible learning management system
  • Chamilo – web-based e-learning and content management system
  • Claroline – collaborative Learning Management System
  • DoceboLMS – SAAS/cloud platform for learning
  • eFront – icon-based learning management system
  • H5P – framework for creating and sharing interactive HTML5 content
  • IUP Portfolio – educational platform for Swedish schools
  • ILIAS – web-based learning management system (LMS)
  • Moodle – learning management system
  • OLAT – web-based Learning Content Management System
  • Omeka – content management system for online digital collections
  • Sakai Project – web-based learning management system
  • SWAD – web-based learning management system

Academic advising

  • FlightPath – academic advising software for universities

Educational suites for children

  • Tux Paint – painting application for 3–12 year olds
  • GCompris – educational entertainment, aimed at children aged 2–10

Language

Operating systems

Mind mapping & others

Offline learning & Open data

  • Kiwix – offline web browser that allows users download Wikipedia entire content and use for offline learning, later was expanded with repositories for Wikimedia Foundation, public domain texts from Project Gutenberg, many of the Stack Exchange sites, and other resources
  • OpenStreetMap – OpenStreetMap was developed in 2004, it uses Open data and users data input through Crowdsourcing and Web mapping to create a complete and downloadable alternative to other online maps, this allow users to enter data when there is no data available due to lack of governance and economic interest or due lower population of the places mapped

Typing

  • KTouch – touch typing lessons with a variety of keyboard layouts
  • Tux Typing – typing tutor for children, featuring two games to improve typing speed

Engineering

File formats

2D

Raster imagery

Vector imagery

3D

Video

Audio

Document & Text

  • .adoc – AsciiDoc
  • .epubebook format
  • .latexLaTeX, macro package built on top of TeX for simplification
  • .mdMarkdown
  • .odtOpenDocument
  • .rtfRich Text Format
  • .tex – high-quality typography for mathematical notation, physics, chemistry, engineering/scientific notation
  • .texinfo

Web and Interactive Media

Database & Data Storage

File managers

Finance

Accounting

  • 1DayLater – invoicing software
  • GnuCashdouble-entry book-keeping
  • HomeBank – personal accounting software
  • KMyMoney – double-entry book-keeping
  • LedgerSMB – double-entry book-keeping
  • RCA open-source application – management accounting application
  • SQL-Ledger – double-entry book-keeping
  • TurboCASH – double-entry book-keeping for Windows

Cryptocurrency

  • Bitcoin – blockchain platform, peer-to-peer decentralised digital currency
  • Ethereum – blockchain platform with smart contract functionality

CRM

  • CiviCRM – Constituent Relationship Management software aimed at charities and NGOs
  • iDempiere – business Suite, ERP and CRM
  • SuiteCRM – web-based CRM

ERP

Human resources

  • OrangeHRM – commercial human resource management

Microfinance

Process management

  • Bonita Open Solution – Business Process Management

Games

Game engines

Physics engines

Shader languages

Action

Application layer

Chess

Educational games

Video game emulation

Music video games

Karaoke

  • UltraStar

Rhythm game

Puzzle

Sandbox

  • Luanti – voxel game engine

Snake games

Simulation

Strategy

Genealogy

Geographic information systems

Graphical user interface

Desktop environments

Window managers

Windowing system

Groupware

Content management systems

Wiki software

Healthcare software

Integrated library management software

  • Evergreen – integrated Library System initially developed for the Georgia Public Library Service's PINES catalog
  • FOLIO - Modular, open-source library services platform
  • Koha – SQL-based library management
  • NewGenLib
  • OpenBiblio
  • PMB
  • refbase – web-based institutional repository and reference management software

Image editor

  • Darktable – digital image workflow management, including RAW photo processing
  • digiKam – integrated photography toolkit including editing abilities
  • GIMP – raster graphics editor aimed at image retouching/editing
  • Hugin – panorama stitching
  • Inkscape – vector graphics editor
  • Karbon – scalable vector drawing application in KDE
  • Krita – digital painting, sketching and 2D animation application, with a variety of brush engines
  • LazPaint – raster and vector graphics editor, aimed at being simpler to use than GIMP
  • LightZone – digital photo editor software application
  • Luminance HDR – high dynamic range images
  • RawTherapee – digital image workflow management aimed at RAW photo processing

Maps & navigation

  • OpenStreetMap – open geographic database updated and maintained by a community of volunteers via open collaboration
  • OsmAnd – freemium maps & navigation Android and iOS app
  • Organic Maps – offline map and navigation app for Android & iOS
  • CoMaps (Android, iOS)

Mathematics

Calculators

Computer algebra systems

Physics

  • ADCIRC
  • Calculix
  • CGNS
  • Code_Saturne
  • Coolfluid
  • Elmer FEM solver
  • FEATool Multiphysics
  • FEniCS Project
  • Gerris
  • KIVA
  • MFEM
  • MOOSE
  • Nek5000
  • Nektar++
  • OpenFOAM
  • OpenLB
  • RELAP5-3D
  • QBlade
  • SU2 code
  • TELEMAC

Computational particle physics

  • AIDA
  • APFEL
  • CASINO
  • CompHEP
  • CORSIKA
  • CP2K
  • EGS
  • EPICS
  • FitIt
  • Geant4
  • Java Analysis Studio
  • MPMC
  • OpenMC
  • PYTHIA
  • ROOT
  • Solarsoft
  • Spinach
  • Surface Evolver
  • TARDIS
  • UrQMD

Computational astrophysics

  • Astropy
  • CMBFAST
  • GADGET
  • CP2K
  • EGS
  • MCSim
  • McStas
  • McXtrace
  • MPMC
  • OpenMC
  • TARDIS

Symbolic manipulation systems

  • FORM (symbolic manipulation system)

Statistics

Numerical analysis

Mathematical libraries

Geometry

  • Geogebra – geometry and algebra
  • C.a.R.
  • CaRMetal
  • DrGeo
  • Kig
  • KSEG

Charting

Mathematical biology

  • COPASI
  • Systems Biology Simulation Core Library
  • Virtual Cell

Mathematical chemistry

  • Cantera
  • CP2K
  • MOPAC
  • NWChem
  • Psi4

Mathematical notation software

Mathematical art software

Spreadsheet

Mobile software

Media

Audio editors, audio management

  • Audacity
  • Ardour – professional digital audio workstation
  • LMMS – digital audio workstation

CD/USB-writing software

Flash animation

  • Pencil2D – for animations
  • SWFTools – for scripting

Game engines

Chess engines

Graphics

2D

  • Pencil2D – simple 2D graphics and animation program
  • Synfig – 2D vector graphics and timeline based animation
  • TupiTube (formerly KTooN) – application for the design and creation of animation
  • OpenToonz – part of a family of 2D animation software
  • Krita – digital painting, sketching and 2D animation application, with a variety of brush engines
  • Blender – computer graphics software, Blender's Grease Pencil tools allow for 2D animation within a full 3D pipeline
  • mtPaintraster graphics editor for creating icons, pixel art

3D

  • Blender – computer graphics software featuring modeling, sculpting, texturing, rigging, simulation, rendering, camera tracking, video editing, and compositing
  • FreeCAD
  • MakeHuman
  • OpenFX – modeling and animation software with a variety of built-in post processing effects
  • Picogen – terrain generator
  • Seamless3d – node-driven 3D modeling software
  • Wings 3Dsubdivision modeler inspired by Nendo and Mirai from Izware

3D rendering

Image galleries

Image viewers

Maps

Multimedia codecs, containers, splitters

Music

Subtitle

  • Aegisub
  • Gnome Subtitles
  • Subtitle Edit

Television

Video converters

Video editing

DVD authoring

  • DeVeDe
  • DVD Flick
  • DVDStyler

Screencast

Other media packages

  • Celtx – media pre-production software

Ripping

  • K9Copy
  • Thoggen

Video encoders

Video players

Networking and Internet

Advertising

  • Revive Adserver
  • Asterisk – telephony and VoIP server
  • Ekiga – video conferencing application for GNOME and Microsoft Windows
  • ConferenceXP – video conferencing application for Windows XP or later
  • Dinoxmpp client, supporting both OMEMO encryption and Jingle Audio/Video protocol, under Windows, Linux and BSD
  • FreePBX – front-end and advanced PBX configuration for Asterisk
  • FreeSWITCH – telephony platform
  • Gajim – xmpp client
  • Jami – cross-platform, peer to peer instant-messaging and video-calling protocol that offers end-to-end encryption and SIP client
  • JitsiJava VoIP and Instant Messaging client
  • QuteCom – voice, video, and IM client application
  • Enterprise Communications System sipXecs – SIP Communications Server
  • Telegram
  • Twinkle – VoIP softphone
  • Tox – cross-platform, peer-to-peer instant-messaging and video-calling protocol that offers end-to-end encryption

E-mail

  • Amavis – email content filter
  • Claws Mail – email Client
  • Fetchmail – email Retrieval
  • Geary – email client based on WebKitGTK+
  • GNUMail – cross-platform email client
  • Hula – discontinued mail and calendar project
  • K-9 Mail – Android Email Client
  • MailScanner – email security system
  • MH Message Handling System – email Client
  • Modest – email Client
  • Mozilla Mail & Newsgroups – email Client that was part of the now discontinued Mozilla Application Suite
  • Mozilla Thunderbird – email, news, RSS, and chat client
  • POPFile – cross-platform mail filter
  • Proton Mail - app and web-based end-to-end encrypted e-mail evolved to become FOSS
  • Roundcube – web-based IMAP email client
  • Sylpheed – email and News Client
  • Sympa – MLA software

File transfer

Grid and distributed processing

  • GNU Queue
  • HTCondor
  • pexec

Instant messaging

IRC Clients

Middleware

  • Apache Axis2Web service framework (implementations are available in both Java & C)
  • Apache Geronimo – application server
  • Bonita Open Solution – J2EE web application and java BPMN2 compliant engine
  • GlassFish – application server
  • Apache Tomcat – servlet container and standalone webserver
  • JBoss – application server
  • OpenRemote – IoT Middleware
  • TAO (software) – C++ implementation of the OMG's CORBA standard

RSS, Atom readers, aggregators

Social network

Peer-to-peer file sharing

Portal Server

Remote access and management

Routing software

Web browsers

Graphical

Text-based

Webcam

  • Cheese – GNOME webcam application
  • Guvcview – Linux webcam application

Webgrabber

  • Apache Cocoon – web application framework
  • Apache Tomcat
  • Apache – web server
  • AWStats – log file parser and analyzer
  • BookmarkSync – tool for browsers
  • Caddy – extensible, cross-platform, web server written in Go.
  • Cherokee – HTTP server
  • curl-loader – HTTP/HTTPS/FTP/FTPS loading and testing tool
  • Docker – Docker Engine is open-source for Linux only
  • FileZilla – FTP
  • H2O – supports HTTP/2, TLS, and server push
  • Hiawatha – HTTP server
  • HTTP File Server – file server software, with a drag-and-drop interface
  • lighttpd – HTTP Server
  • Lucee – CFML application server
  • Nginx – web server/reverse proxy and e-mail (IMAP/POP3) proxy
  • NetKernel – Internet application server
  • Qcodo – PHP5 framework
  • Squid – web proxy cache
  • thttpd – designed for simplicity, small memory footprint, and speed
  • Vaadin – Java-based framework for creating web applications
  • Varnish – web application accelerator/reverse proxy and load balancer/HTTP router
  • XAMPP – package of web applications including Apache and MariaDB
  • Zope – web application server

Web search engines

Other networking programs

Office software

Text editors

Software Platform
AbiWord Linux, Windows
Atom (text editor) macOS 10.9 or later, Windows 7 and later, and Linux
gedit Linux, MacOS
GNOME Text Editor Linux
Kate (text editor) 25 Linux distributions, Microsoft Windows, macOS
Leafpad Linux, BSD, Maemo
Metapad Windows
Mousepad Linux, BSD, Maemo
Notepad++ Windows
Proton Doc Linux, macOS, Windows, Android, iOS
Visual Studio Code Linux, Windows, macOS

Spreadsheet software

Software Operating system Format
Gnumeric Unix-like (Linux included) .gnm, .gnumeric
GNU Oleo Linux .oleo[12]
Pyspread Unix-like, Windows .CSV, .XLS, .SVG, .PDF
Sheetster Cross-platform JSON, XML, .XLS, .CSV, xlsx/.ooxml, .exml, .zip

Office suites

  • Apache OpenOffice – the cross platform office productivity suite from Apache Software Foundation (ASF) consists of programs for word processing, spreadsheets, presentation, diagrams and drawings, databases, etc.
  • Calligra Suite – the office productivity suite from KDE consists of programs for word processing, spreadsheets, presentation, databases, vector graphics, and digital painting
  • Collabora Online – edition of LibreOffice, web application, mobile phone, tablet, Chromebook and desktop (Windows, macOS, Linux)[13]
  • LibreOffice – the cross platform office productivity suite from The Document Foundation (TDF) consists of programs for word processing, spreadsheets, presentation, diagrams and drawings, databases, etc.
  • OnlyOffice Desktop Editors – offline edition of the Cloud

PDF editors

  • PDFsam Basic edition – platform independent software designed to split, merge, mix, extract pages and rotate PDF files for Windows, Linux, MacOS. Open-source version of their commercial offering

Operating systems

Be advised that available distributions of these systems can contain, or offer to build and install, added software that is neither free software nor open-source.

Emulation and Virtualization

Personal information managers

  • Chandler – developed by the Open Source Applications Foundation (OSAF)
  • KAddressBook
  • Kontact
  • KOrganizer
  • Mozilla Calendar – Mozilla-based, multi-platform calendar program
  • GNOME Evolution
  • Perkeep – personal data store for pictures
  • Project.net – commercial project management
  • TeamLab – platform for project management and collaboration

Programming language support

Programming languages

Source code editors

Compilers and assemblers

Bug trackers

Code generators

  • BabelJavaScript transcompiler
  • Bison
  • CodeSynthesis XSD – XML Data Binding compiler for C++
  • CodeSynthesis XSD/e – validating XML parser/serializer and C++ XML Data Binding generator for mobile and embedded systems
  • Flex lexical analyser – generates lexical analyzers
  • Open Scene Graph – 3D graphics application programming interface
  • OpenSCDP – Open Smart Card Development Platform
  • SableCC – parser generator for Java and .NET
  • SWIG – Simplified Wrapper and Interface Generator for several languages
  • xmlbeansxx – XML Data Binding code generator for C++
  • YAKINDU Statechart Tools – Statechart code generator for C++ and Java

Documentation generators

  • Doxygen – tool for writing software reference documentation. The documentation is written within code
  • Mkd – extracts software documentation from source code files, pseudocode, or comments
  • Natural Docs

Configuration software

Debuggers (for testing and trouble-shooting)

Integrated development environments

Version control systems

Reference management software

Risk management

Science

Bioinformatics

Bioinformatics libraries and toolkits

Biology

Systems and cellular biology

  • COPASI
  • Systems Biology Simulation Core Library
  • Virtual Cell
  • CellProfiler
  • ImageJ

Molecular and structural biology

Population and evolutionary biology

Computational chemistry

  • ABINIT
  • BigDFT
  • CP2K
  • Dalton
  • DIRAC
  • FLEUR
  • FreeON
  • MADNESS
  • Massively parallel quantum chemistry
  • MOLCAS
  • MOPAC
  • NWChem
  • Octopus
  • PARSEC
  • PLATO
  • PSI4
  • PySCF
  • Qbox
  • Quantum ESPRESSO
  • SIESTA
  • YAMBO

Molecular dynamics

  • Advanced Simulation Library
  • BALL
  • Biskit
  • Car–Parrinello molecular dynamics
  • GROMACS
  • LAMMPS
  • NAMD
  • Newton-X
  • OpenAtom
  • OpenMM
  • RMG

Molecular modeling

Cheminformatics & docking

  • Avogadro
  • Biskit
  • Chemistry Development Kit
  • Gabedit
  • Ghemical
  • JOELib
  • Open Babel
  • RDKit
  • SHELX

Utilities / frameworks

  • Cantera
  • CASINO
  • CONQUEST
  • DP code
  • EXC code
  • FDMNES
  • Internal Coordinate Mechanics
  • OctaDist
  • Spinach

Data science

  • Apache Flink – stream and batch data processing framework
  • Apache Hadoop – distributed storage and processing framework
  • Apache Mahout – scalable machine learning library
  • Apache Spark – unified analytics engine
  • Dask – parallel computing for analytics in Python
  • ELKI – data analysis algorithms library
  • GNU Octave – numerical computing environment
  • JASPGUI program for data analytics, data science, and machine learning
  • Jupyter Notebook – interactive computing
  • Keras – neural network library
  • KNIME – data analytics platform
  • Matplotlib – data visualization library
  • MLlib – machine learning library for Apache Spark
  • NumPy – numerical computing library
  • Orange – data mining tool
  • pandas – data manipulation library
  • PyTorch – machine learning and deep learning framework
  • Python
  • R – statistical computing language
  • SageMath – mathematics and data analysis environment
  • SciPy – scientific computing library
  • scikit-learn – Python machine learning library
  • TensorFlow – machine learning framework
  • WEKA – machine learning and data analysis suite

Electronic lab notebooks

Geographic information systems

Geoscience

Grid computing

Microscope image processing

  • CellProfiler – automatic microscopic analysis, aimed at individuals lacking training in computer vision
  • Endrov – Java-based plugin architecture designed to analyse complex spatio-temporal image data
  • Fiji – imageJ-based image processing
  • Gwyddion – scanning probe microscopy data visualization and processing
  • Ilastik – image-classification and segmentation software
  • ImageJ – image processing application developed at the National Institutes of Health
  • IMOD – 2D and 3D analysis of electron microscopy data
  • ITK – development framework used for creation of image segmentation and registration programs
  • KNIME – data analytics, reporting, and integration platform
  • VTK – C++ toolkit for 3D computer graphics, image processing, and visualisation
  • 3DSlicer – medical image analysis and visualisation

Molecular design software

  • Ascalaph Designer
  • Winmostar

Molecular dynamics

  • GROMACS – protein, lipid, and nucleic acid simulation
  • LAMMPS – molecular dynamics software
  • MDynaMix – general-purpose molecular dynamics, simulating mixtures of molecules
  • ms2 – molecular dynamics and Monte Carlo simulation package to predict thermophysical properties of fluids
  • NWChem – wuantum chemical and molecular dynamics software

Molecule editors

  • Ascalaph Designer
  • Avogadro
  • Gabedit
  • JChemPaint
  • Kekulé Program
  • XDrawChem

Molecular graphics systems

Molecular mechanics modeling

  • Chemfig
  • JChemPaint
  • XDrawChem
  • XyMTeX

Molecule viewer

  • Avogadro – plugin-extensible molecule visualisation
  • BALLView – molecular modeling and visualisation
  • Jmol – 3D representation of molecules in many formats, for teaching use
  • Molekel – molecule viewing software
  • MeshLab – able to import PDB dataset and build up surfaces from them
  • PyMOL – high-quality representations of small molecules and biological macromolecules
  • QuteMol – interactive molecule representations offering an array of innovative OpenGL visual effects
  • RasMol – visualizes biological macromolecules

Nanotechnology

Nuclear Fusion Engineering

  • OpenMC

Plotting

  • Veusz

Quantum chemistry

  • CP2K – atomistic and molecular simulation of solid-state, liquid, molecular, and biological systems

Screensavers

Simulation software

Statistics

  • R – statistics software
  • LimeSurvey – online survey system

Theology

Bible study tools

Typesetting

Web conferencing

See also

General directories

Open-source organizations

References

  1. ^ Richard Stallman (July 13, 2011). "Why Open Source misses the point of Free Software". Retrieved August 24, 2011.
  2. ^ Allen, Matthew (2025-09-02). "Switzerland launches transparent ChatGPT alternative". SWI swissinfo.ch. Retrieved 2026-01-21. Apertus (from the Latin word meaning "open") leaves nothing to the imagination in this respect. It promises that every nut and bolt is open for public scrutiny along with its design manual and recipe formula.
  3. ^ model weights only
  4. ^ "google/gemma-4-31B-it · Hugging Face". huggingface.co. 2026-04-02. Retrieved 2026-04-07.
  5. ^ Cheng, Evelyn (28 July 2025). "China's latest AI model claims to be even cheaper to use than DeepSeek". CNBC. Retrieved 12 April 2026.
  6. ^ Heath, Alex (2025-08-05). "OpenAI releases a free GPT model that can run on your laptop". The Verge. Retrieved 2026-03-07.
  7. ^ "Models Overview | Mistral AI Large Language Models". docs.mistral.ai. Archived from the original on 2025-04-09. Retrieved 2026-03-07.
  8. ^ Mo, Liam; Hall, Casey (19 September 2024). "Alibaba accelerates AI push by releasing new open-source models, text-to-video". Reuters.
  9. ^ https://github.com/UBTECH-Robot/Thinker
  10. ^ "Further Development of Verification Check-casesforSix-Degree-of-Freedom Flight Vehicle Simulations" (PDF). NASA Engineering and Safety Center Academy. 2015. Archived (PDF) from the original on March 10, 2021.
  11. ^ nostr - Notes and Other Stuff Transmitted by Relays, nostr-protocol, 2024-01-06, retrieved 2024-01-06
  12. ^ "File Formats".
  13. ^ Bärwaldt, Eric (2020-09-01). "Working Together Tools for collaborative office work". Linux Magazine (238/2020). For cross-platform use, the suite not only supports the Open Document Format (ODF) but also all newer Microsoft formats, which makes interaction with other office suites easier.